PowerExplorer

DOI: 10.18129/B9.bioc.PowerExplorer    

This is the development version of PowerExplorer; to use it, please install the devel version of Bioconductor.

Power Estimation Tool for RNA-Seq and proteomics data

Bioconductor version: Development (3.10)

Estimate and predict power among groups and multiple sample sizes with simulated data, the simulations are operated based on distribution parameters estimated from the provided input dataset.

Author: Xu Qiao [aut, cre], Laura Elo [cph]

Maintainer: Xu Qiao <xu.qiao at utu.fi>

Citation (from within R, enter citation("PowerExplorer")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("PowerExplorer")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("PowerExplorer")

 

PDF R Script PowerExplorer Manual
PDF   Reference Manual
Text   NEWS

Details

biocViews ChIPSeq, Coverage, DifferentialExpression, ImmunoOncology, MultipleComparison, Proteomics, RNASeq, Sequencing, Software
Version 1.5.0
In Bioconductor since BioC 3.7 (R-3.5) (1.5 years)
License Artistic-2.0
Depends R (>= 3.5.0), SummarizedExperiment
Imports DESeq2, ROTS, vsn, stats, utils, methods, gridExtra, MASS, data.table, ggplot2, Biobase, S4Vectors, BiocParallel
LinkingTo
Suggests knitr, rmarkdown
SystemRequirements
Enhances
URL https://gitlab.utu.fi/CompBioMedNGSTools/PowerExplorer
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package PowerExplorer_1.5.0.tar.gz
Windows Binary PowerExplorer_1.5.0.zip
Mac OS X 10.11 (El Capitan) PowerExplorer_1.5.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/PowerExplorer
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/PowerExplorer
Package Short Url https://bioconductor.org/packages/PowerExplorer/
Package Downloads Report Download Stats

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