MetaVolcanoR

DOI: 10.18129/B9.bioc.MetaVolcanoR    

This is the development version of MetaVolcanoR; to use it, please install the devel version of Bioconductor.

Gene expression meta-analysis visualization tool

Bioconductor version: Development (3.10)

This package combines differential gene expression results. It implements three strategies to summarize gene expression activities from different studies. i) a naive vote-counting approach, ii) a combining-approach and iii) Random Effects Model (REM) approach. In all cases, MetaVolcano exploits the Volcano plot reasoning to visualize the gene expression meta-analysis results.

Author: Cesar Prada [aut, cre], Helder Nakaya [aut, ths]

Maintainer: Cesar Prada <cesar.prada at usp.br>

Citation (from within R, enter citation("MetaVolcanoR")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MetaVolcanoR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MetaVolcanoR")

 

HTML R Script MetaVolcanoR: Differential expression meta-analysis tool
PDF   Reference Manual
Text   NEWS

Details

biocViews DifferentialExpression, GeneExpression, RNASeq, Software, Transcriptomics, mRNAMicroarray
Version 0.99.14
In Bioconductor since BioC 3.10 (R-3.6)
License GPL-3
Depends R (>= 3.6.0)
Imports methods, data.table, dplyr, tidyr, plotly, ggplot2, cowplot, parallel, metafor, metap, rlang, topconfects, grDevices, graphics, stats, htmlwidgets
LinkingTo
Suggests knitr, testthat
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MetaVolcanoR_0.99.14.tar.gz
Windows Binary MetaVolcanoR_0.99.14.zip
Mac OS X 10.11 (El Capitan) MetaVolcanoR_0.99.14.tgz
Source Repository git clone https://git.bioconductor.org/packages/MetaVolcanoR
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MetaVolcanoR
Package Short Url https://bioconductor.org/packages/MetaVolcanoR/
Package Downloads Report Download Stats

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