DOI: 10.18129/B9.bioc.MTseeker    

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see MTseeker.

Bioconductor Tools for Human Mitochondrial Variant Analysis

Bioconductor version: 3.10

Variant analysis tools for mitochondrial genetics.

Author: Tim Triche [cre, aut], Noor Sohail [aut], Ben Johnson [aut], Tim Vickers [ctb], Azif Zubair [ctb]

Maintainer: Tim Triche <tim.triche at>

Citation (from within R, enter citation("MTseeker")):


To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



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PDF   Reference Manual


biocViews Genetics, Metabolomics, Software, VariantAnnotation
Version 1.3.0
In Bioconductor since BioC 3.8 (R-3.5) (1.5 years)
License GPL-3
Depends viridis, S4Vectors, GenomeInfoDb, GenomicAlignments, VariantAnnotation
Imports xml2, utils, gmapR, methods, IRanges, Biobase, circlize, jsonlite, graphics, Rsamtools, grDevices, Biostrings, rtracklayer, VariantTools, Homo.sapiens, BiocGenerics, GenomicRanges, GenomicFeatures, SummarizedExperiment
Suggests MTseekerData, BiocStyle, rmarkdown, ggthemes, ggplot2, pkgdown, knitr, rsvg
Depends On Me
Imports Me MTseekerData
Suggests Me
Links To Me
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Follow Installation instructions to use this package in your R session.

Source Package MTseeker_1.3.0.tar.gz
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Mac OS X 10.11 (El Capitan) MTseeker_1.3.0.tgz
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