MSstatsQC

DOI: 10.18129/B9.bioc.MSstatsQC    

This is the development version of MSstatsQC; to use it, please install the devel version of Bioconductor.

Longitudinal system suitability monitoring and quality control for proteomic experiments

Bioconductor version: Development (3.10)

MSstatsQC is an R package which provides longitudinal system suitability monitoring and quality control tools for proteomic experiments.

Author: Eralp Dogu [aut, cre], Sara Taheri [aut], Olga Vitek [aut]

Maintainer: Eralp Dogu <eralp.dogu at gmail.com>

Citation (from within R, enter citation("MSstatsQC")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("MSstatsQC")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MSstatsQC")

 

HTML R Script MSstatsQC
PDF   Reference Manual
Text   NEWS

Details

biocViews ImmunoOncology, MassSpectrometry, Proteomics, QualityControl, Software
Version 2.3.0
In Bioconductor since BioC 3.6 (R-3.4) (2 years)
License Artistic License 2.0
Depends
Imports dplyr, plotly, RecordLinkage, ggplot2, ggExtra, stats, grid, MSnbase, qcmetrics
LinkingTo
Suggests knitr, rmarkdown, testthat, RforProteomics
SystemRequirements
Enhances
URL http://msstats.org/msstatsqc
BugReports https://groups.google.com/forum/#!forum/msstatsqc
Depends On Me
Imports Me MSstatsQCgui
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MSstatsQC_2.3.0.tar.gz
Windows Binary MSstatsQC_2.3.0.zip
Mac OS X 10.11 (El Capitan) MSstatsQC_2.3.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/MSstatsQC
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MSstatsQC
Package Short Url https://bioconductor.org/packages/MSstatsQC/
Package Downloads Report Download Stats

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