M3C

DOI: 10.18129/B9.bioc.M3C    

This is the development version of M3C; to use it, please install the devel version of Bioconductor.

Monte Carlo Reference-based Consensus Clustering

Bioconductor version: Development (3.10)

M3C is a consensus clustering algorithm that uses a Monte Carlo simulation to eliminate overestimation of K and can reject the null hypothesis K=1.

Author: Christopher John, David Watson

Maintainer: Christopher John <chris.r.john86 at gmail.com>

Citation (from within R, enter citation("M3C")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("M3C")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("M3C")

 

PDF R Script M3C
PDF   Reference Manual
Text   NEWS

Details

biocViews Clustering, GeneExpression, ImmunoOncology, RNASeq, Sequencing, Software, Transcription
Version 1.7.1003
In Bioconductor since BioC 3.6 (R-3.4) (2 years)
License AGPL-3
Depends R (>= 3.5.0)
Imports ggplot2, Matrix, doSNOW, NMF, RColorBrewer, cluster, parallel, foreach, doParallel, matrixcalc, dendextend, sigclust, Rtsne, survival, corpcor, umap
LinkingTo
Suggests knitr, rmarkdown
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package M3C_1.7.1003.tar.gz
Windows Binary M3C_1.7.1003.zip
Mac OS X 10.11 (El Capitan) M3C_1.7.1003.tgz
Source Repository git clone https://git.bioconductor.org/packages/M3C
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/M3C
Package Short Url https://bioconductor.org/packages/M3C/
Package Downloads Report Download Stats

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