DOI: 10.18129/B9.bioc.JunctionSeq    

This is the development version of JunctionSeq; to use it, please install the devel version of Bioconductor.

JunctionSeq: A Utility for Detection of Differential Exon and Splice-Junction Usage in RNA-Seq data

Bioconductor version: Development (3.10)

A Utility for Detection and Visualization of Differential Exon or Splice-Junction Usage in RNA-Seq data.

Author: Stephen Hartley [aut, cre] (PhD), Simon Anders [cph], Alejandro Reyes [cph]

Maintainer: Stephen Hartley <JunctionSeq-contact at list.nih.gov>

Citation (from within R, enter citation("JunctionSeq")):


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if (!requireNamespace("BiocManager", quietly = TRUE))

# The following initializes usage of Bioc devel


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PDF JunctionSeq Vignette
PDF   Reference Manual
Text   NEWS


biocViews DifferentialExpression, ImmunoOncology, RNASeq, Sequencing, Software
Version 1.15.0
In Bioconductor since BioC 3.3 (R-3.3) (3.5 years)
License file LICENSE
Depends R (>= 3.2.2), methods, SummarizedExperiment(>= 0.2.0), Rcpp (>= 0.11.0), RcppArmadillo (>=
Imports DESeq2(>= 1.10.0), statmod, Hmisc, plotrix, stringr, Biobase(>= 2.30.0), locfit, BiocGenerics(>= 0.7.5), BiocParallel, genefilter, geneplotter, S4Vectors, IRanges, GenomicRanges
LinkingTo Rcpp, RcppArmadillo
Suggests MASS, knitr, JctSeqData, BiocStyle
Enhances Cairo, pryr
URL http://hartleys.github.io/JunctionSeq/index.html
BugReports https://github.com/hartleys/JunctionSeq/issues
Depends On Me
Imports Me PathwaySplice
Suggests Me JctSeqData
Links To Me
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Source Package JunctionSeq_1.15.0.tar.gz
Windows Binary JunctionSeq_1.15.0.zip
Mac OS X 10.11 (El Capitan) JunctionSeq_1.15.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/JunctionSeq
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/JunctionSeq
Package Short Url https://bioconductor.org/packages/JunctionSeq/
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