Guitar

DOI: 10.18129/B9.bioc.Guitar    

Guitar

Bioconductor version: Release (3.10)

The package is designed for visualization of RNA-related genomic features with respect to the landmarks of RNA transcripts, i.e., transcription starting site, start codon, stop codon and transcription ending site.

Author: Xiao Du, Hui Liu, Lin Zhang, Jia Meng

Maintainer: Jia Meng <jia.meng at xjtlu.edu.cn>

Citation (from within R, enter citation("Guitar")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Guitar")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Guitar")

 

PDF R Script Guitar
PDF   Reference Manual
Text   NEWS

Details

biocViews Alignment, DataImport, MethylSeq, QualityControl, RNASeq, Sequencing, Software, SplicedAlignment, Transcription
Version 2.2.0
In Bioconductor since BioC 3.2 (R-3.2) (4 years)
License GPL-2
Depends GenomicFeatures, rtracklayer, AnnotationDbi, GenomicRanges, magrittr, ggplot2, methods, stats, utils, knitr, dplyr
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Guitar_2.2.0.tar.gz
Windows Binary Guitar_2.2.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) Guitar_2.2.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Guitar
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Guitar
Package Short Url https://bioconductor.org/packages/Guitar/
Package Downloads Report Download Stats

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