DOI: 10.18129/B9.bioc.GOSemSim    

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see GOSemSim.

GO-terms Semantic Similarity Measures

Bioconductor version: 3.10

The semantic comparisons of Gene Ontology (GO) annotations provide quantitative ways to compute similarities between genes and gene groups, and have became important basis for many bioinformatics analysis approaches. GOSemSim is an R package for semantic similarity computation among GO terms, sets of GO terms, gene products and gene clusters. GOSemSim implemented five methods proposed by Resnik, Schlicker, Jiang, Lin and Wang respectively.

Author: Guangchuang Yu [aut, cre], Alexey Stukalov [ctb], Chuanle Xiao [ctb], LluĂ­s Revilla Sancho [ctb]

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

Citation (from within R, enter citation("GOSemSim")):


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HTML R Script An introduction to GOSemSim
PDF   Reference Manual
Text   NEWS


biocViews Annotation, Clustering, GO, Network, Pathways, Software
Version 2.12.1
In Bioconductor since BioC 2.4 (R-2.9) (11 years)
License Artistic-2.0
Depends R (>= 3.4.0)
Imports AnnotationDbi, GO.db, methods, utils
LinkingTo Rcpp
Suggests AnnotationHub, BiocManager, clusterProfiler, DOSE, knitr, org.Hs.eg.db, prettydoc, testthat
URL https://guangchuangyu.github.io/software/GOSemSim
BugReports https://github.com/YuLab-SMU/GOSemSim/issues
Depends On Me tRanslatome
Imports Me clusterProfiler, DOSE, enrichplot, GAPGOM, meshes, Rcpi, ViSEAGO
Suggests Me BioCor, epiNEM, FELLA, SemDist
Links To Me
Build Report  

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Source Package GOSemSim_2.12.1.tar.gz
Windows Binary GOSemSim_2.12.1.zip
Mac OS X 10.11 (El Capitan) GOSemSim_2.12.1.tgz
Source Repository git clone https://git.bioconductor.org/packages/GOSemSim
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GOSemSim
Package Short Url https://bioconductor.org/packages/GOSemSim/
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