DOI: 10.18129/B9.bioc.DEScan2    

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see DEScan2.

Differential Enrichment Scan 2

Bioconductor version: 3.10

Integrated peak and differential caller, specifically designed for broad epigenomic signals.

Author: Dario Righelli [aut, cre], John Koberstein [aut], Bruce Gomes [aut], Nancy Zhang [aut], Claudia Angelini [aut], Lucia Peixoto [aut], Davide Risso [aut]

Maintainer: Dario Righelli <dario.righelli at>

Citation (from within R, enter citation("DEScan2")):


To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



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biocViews Coverage, Epigenetics, ImmunoOncology, PeakDetection, Sequencing, Software
Version 1.6.0
In Bioconductor since BioC 3.7 (R-3.5) (2 years)
License Artistic-2.0
Depends R (>= 3.5), GenomicRanges
Imports BiocParallel, BiocGenerics, ChIPpeakAnno, data.table, DelayedArray, GenomeInfoDb, GenomicAlignments, glue, IRanges, plyr, Rcpp (>= 0.12.13), rtracklayer, S4Vectors(>= 0.23.19), SummarizedExperiment, tools, utils
LinkingTo Rcpp, RcppArmadillo
Suggests BiocStyle, knitr, rmarkdown, testthat, edgeR, limma, EDASeq, RUVSeq, RColorBrewer, statmod
Depends On Me
Imports Me
Suggests Me
Links To Me
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Source Package DEScan2_1.6.0.tar.gz
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