DOI: 10.18129/B9.bioc.DChIPRep    

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see DChIPRep.

DChIPRep - Analysis of chromatin modification ChIP-Seq data with replication

Bioconductor version: 3.10

The DChIPRep package implements a methodology to assess differences between chromatin modification profiles in replicated ChIP-Seq studies as described in Chabbert et. al - http://www.dx.doi.org/10.15252/msb.20145776. A detailed description of the method is given in the software paper at https://doi.org/10.7717/peerj.1981

Author: Bernd Klaus [aut, cre], Christophe Chabbert [aut], Sebastian Gibb [ctb]

Maintainer: Bernd Klaus <bernd.klaus at embl.de>

Citation (from within R, enter citation("DChIPRep")):


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if (!requireNamespace("BiocManager", quietly = TRUE))


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biocViews ChIPSeq, Sequencing, Software, WholeGenome
Version 1.16.0
In Bioconductor since BioC 3.2 (R-3.2) (4.5 years)
License MIT + file LICENCE
Depends R (>= 3.4), DESeq2
Imports methods, stats, utils, ggplot2, fdrtool, reshape2, GenomicRanges, SummarizedExperiment, smoothmest, plyr, tidyr, assertthat, S4Vectors, purrr, soGGi, ChIPpeakAnno
Suggests mgcv, testthat, BiocStyle, knitr, rmarkdown
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Source Package DChIPRep_1.16.0.tar.gz
Windows Binary DChIPRep_1.16.0.zip
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