DOI: 10.18129/B9.bioc.ComplexHeatmap    

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see ComplexHeatmap.

Make Complex Heatmaps

Bioconductor version: 3.10

Complex heatmaps are efficient to visualize associations between different sources of data sets and reveal potential patterns. Here the ComplexHeatmap package provides a highly flexible way to arrange multiple heatmaps and supports various annotation graphics.

Author: Zuguang Gu

Maintainer: Zuguang Gu < at>

Citation (from within R, enter citation("ComplexHeatmap")):


To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



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biocViews Sequencing, Software, Visualization
Version 2.2.0
In Bioconductor since BioC 3.1 (R-3.2) (5 years)
License MIT + file LICENSE
Depends R (>= 3.1.2), methods, grid, graphics, stats, grDevices
Imports circlize (>= 0.4.5), GetoptLong, colorspace, clue, RColorBrewer, GlobalOptions (>= 0.1.0), parallel, png
Suggests testthat (>= 1.0.0), knitr, markdown, dendsort, Cairo, jpeg, tiff, fastcluster, dendextend (>= 1.0.1), grImport, grImport2, glue, GenomicRanges
Depends On Me AMARETTO, EnrichedHeatmap, recoup
Imports Me artMS, BiocOncoTK, blacksheepr, CATALYST, COCOA, cola, DEComplexDisease, DEGreport, DEP, diffcyt, ELMER, EnrichmentBrowser, fCCAC, ImpulseDE2, LineagePulse, muscat, MWASTools, PathoStat, profileplyr, SEtools, singleCellTK, TCGAWorkflow, Xeva, YAPSA
Suggests Me ALPS, gtrellis, HilbertCurve, projectR, TCGAbiolinks, TCGAutils, TimeSeriesExperiment
Links To Me
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Follow Installation instructions to use this package in your R session.

Source Package ComplexHeatmap_2.2.0.tar.gz
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Mac OS X 10.11 (El Capitan) ComplexHeatmap_2.2.0.tgz
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