DOI: 10.18129/B9.bioc.CNVfilteR    

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see CNVfilteR.

Identifies false positives of CNV calling tools by using SNV calls

Bioconductor version: 3.10

CNVfilteR identifies those CNVs that can be discarded by using the single nucleotide variant (SNV) calls that are usually obtained in common NGS pipelines.

Author: Jose Marcos Moreno-Cabrera <jmoreno at> and Bernat Gel <bgel at>

Maintainer: Jose Marcos Moreno-Cabrera <jmoreno at>

Citation (from within R, enter citation("CNVfilteR")):


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biocViews CopyNumberVariation, DNASeq, DataImport, Sequencing, Software, Visualization
Version 1.0.4
In Bioconductor since BioC 3.10 (R-3.6) (< 6 months)
License Artistic-2.0
Depends R (>= 3.6)
Imports IRanges, GenomicRanges, SummarizedExperiment, pracma, regioneR, assertthat, karyoploteR, CopyNumberPlots, graphics, utils, VariantAnnotation, Rsamtools, GenomeInfoDb, Biostrings, methods
Suggests knitr, BSgenome.Hsapiens.UCSC.hg19, BSgenome.Hsapiens.UCSC.hg19.masked
Depends On Me
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