DOI: 10.18129/B9.bioc.CNPBayes    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.10 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see CNPBayes.

Bayesian mixture models for copy number polymorphisms

Bioconductor version: Release (3.10)

Bayesian hierarchical mixture models for batch effects and copy number.

Author: Stephen Cristiano, Jacob Carey, and Rob Scharpf

Maintainer: Jacob Carey <jcarey15 at>

Citation (from within R, enter citation("CNPBayes")):


To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


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biocViews Bayesian, CopyNumberVariation, Software
Version 1.16.0
In Bioconductor since BioC 3.2 (R-3.2) (4.5 years)
License Artistic-2.0
Depends R (>= 3.4.0), IRanges, GenomicRanges
Imports Rcpp (>= 0.12.1), S4Vectors, matrixStats, RColorBrewer, gtools, combinat, GenomeInfoDb(>= 1.11.6), methods, BiocGenerics, graphics, stats, coda, SummarizedExperiment, mclust, reshape2, ggplot2, magrittr, purrr, tidyr, dplyr, tibble, scales, data.table, RcppArmadillo
LinkingTo Rcpp
Suggests testthat, knitr, BiocStyle, rmarkdown, BiocCheck, MASS, VanillaICE, tidyverse
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