BRAIN

DOI: 10.18129/B9.bioc.BRAIN    

This is the development version of BRAIN; to use it, please install the devel version of Bioconductor.

Baffling Recursive Algorithm for Isotope distributioN calculations

Bioconductor version: Development (3.10)

Package for calculating aggregated isotopic distribution and exact center-masses for chemical substances (in this version composed of C, H, N, O and S). This is an implementation of the BRAIN algorithm described in the paper by J. Claesen, P. Dittwald, T. Burzykowski and D. Valkenborg.

Author: Piotr Dittwald, with contributions of Dirk Valkenborg and Jurgen Claesen

Maintainer: Piotr Dittwald <piotr.dittwald at mimuw.edu.pl>

Citation (from within R, enter citation("BRAIN")):

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("BRAIN")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("BRAIN")

 

PDF R Script BRAIN Usage
PDF   Reference Manual

Details

biocViews ImmunoOncology, MassSpectrometry, Proteomics, Software
Version 1.31.0
In Bioconductor since BioC 2.10 (R-2.15) (7.5 years)
License GPL-2
Depends R (>= 2.8.1), PolynomF, Biostrings, lattice
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me cleaver, RforProteomics, synapter
Links To Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package BRAIN_1.31.0.tar.gz
Windows Binary BRAIN_1.31.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) BRAIN_1.31.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/BRAIN
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/BRAIN
Package Short Url https://bioconductor.org/packages/BRAIN/
Package Downloads Report Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations: