DOI: 10.18129/B9.bioc.AnnotationHubData    

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see AnnotationHubData.

Transform public data resources into Bioconductor Data Structures

Bioconductor version: 3.10

These recipes convert a wide variety and a growing number of public bioinformatic data sets into easily-used standard Bioconductor data structures.

Author: Martin Morgan [ctb], Marc Carlson [ctb], Dan Tenenbaum [ctb], Sonali Arora [ctb], Paul Shannon [ctb], Lori Shepherd [ctb], Bioconductor Package Maintainer [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at>

Citation (from within R, enter citation("AnnotationHubData")):


To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



HTML AnnotationHub: Creating An AnnotationHub Package
HTML Introduction to AnnotationHubData
PDF   Reference Manual
Text   NEWS


biocViews DataImport, Software
Version 1.16.0
In Bioconductor since BioC 3.2 (R-3.2) (4.5 years)
License Artistic-2.0
Depends R (>= 3.2.2), methods, utils, S4Vectors(>= 0.7.21), IRanges(>= 2.3.23), GenomicRanges, AnnotationHub(>= 2.15.15)
Imports GenomicFeatures, Rsamtools, rtracklayer, BiocGenerics, jsonlite, BiocManager, biocViews, AnnotationDbi, Biobase, Biostrings, DBI, GenomeInfoDb(>= 1.15.4), OrganismDbi, RSQLite, rBiopaxParser, AnnotationForge, futile.logger (>= 1.3.0), XML, RCurl
Suggests RUnit, knitr, BiocStyle, grasp2db, GenomeInfoDbData
Depends On Me ExperimentHubData, ProteomicsAnnotationHubData
Imports Me AHEnsDbs, EuPathDB
Suggests Me GenomicState
Links To Me
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Follow Installation instructions to use this package in your R session.

Source Package AnnotationHubData_1.16.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) AnnotationHubData_1.16.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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