DOI: 10.18129/B9.bioc.ASpediaFI    

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see ASpediaFI.

ASpedia-FI: Functional Interaction Analysis of Alternative Splicing Events

Bioconductor version: 3.10

This package provides functionalities for a systematic and integrative analysis of alternative splicing events and their functional interactions.

Author: Doyeong Yu, Kyubin Lee, Daejin Hyung, Soo Young Cho, Charny Park

Maintainer: Doyeong Yu <nachoryu at>

Citation (from within R, enter citation("ASpediaFI")):


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PDF R Script ASpediaFI.pdf
PDF   Reference Manual
Text   NEWS


biocViews AlternativeSplicing, Annotation, Coverage, GeneExpression, GeneSetEnrichment, GraphAndNetwork, KEGG, Network, NetworkInference, Pathways, Reactome, Sequencing, Software, Transcription, Visualization
Version 1.0.0
In Bioconductor since BioC 3.10 (R-3.6) (< 6 months)
License GPL-3
Depends R (>= 3.6.0), SummarizedExperiment, ROCR
Imports BiocParallel, GenomicAlignments, GenomicFeatures, GenomicRanges, IRanges, IVAS, Rsamtools, biomaRt, limma, S4Vectors, stats, DRaWR, GenomeInfoDb, Gviz, Matrix, dplyr, fgsea, reshape2, igraph, graphics, e1071, methods, rtracklayer, scales, grid, ggplot2, mGSZ, utils
Suggests knitr
Depends On Me
Imports Me
Suggests Me
Links To Me
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Source Package ASpediaFI_1.0.0.tar.gz
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