fastClust {scDblFinder} | R Documentation |
fastClust
fastClust(sce, nfeatures = 1000, k = 10, dims = 20, graph.type = c("snn", "knn"), method = c("louvain", "fast_greedy", "overcluster"), BPPARAM = BiocParallel::SerialParam(), ...)
sce |
An object of class 'SingleCellExperiment' |
nfeatures |
For the PCA |
k |
number of nearest neighbors |
dims |
number of PCA dimensions |
graph.type |
either snn or knn |
method |
Either 'louvain' or 'fast_greedy' |
BPPARAM |
Passed to scran for KNN/SNN graph generation |
... |
passed to 'overcluster' |
The 'SingleCellExperiment' object with an additional colData column scDblFinder.clusters