GOcount {ViSEAGO} | R Documentation |
This method displays in barplot the count of GO terms splitted in two categories (significant or not) for each result of GO enrichment tests.
GOcount(object, file = NULL) ## S4 method for signature 'ANY' GOcount(object, file = NULL)
object |
an |
file |
the name of the output file (default to NULL for interactive screen display). |
This method displays an interactive barplot, using plotly package, from a merge_enrich_terms
output object.
A static image (in png) could be printed by setting file
argument.
a barplot.
Carson Sievert, Chris Parmer, Toby Hocking, Scott Chamberlain, Karthik Ram, Marianne Corvellec and Pedro Despouy (2017). plotly: Create InteractiveWeb Graphics via 'plotly.js'. R package version 4.6.0. https://CRAN.R-project.org/package=plotly.
Other GO_terms: GOterms_heatmap
,
annotate
, create_topGOdata
,
gene2GO-class
,
merge_enrich_terms
Other visualization: GOclusters_heatmap
,
GOterms_heatmap
, Upset
,
available_organisms
,
overLapper
, show_heatmap
,
show_table
################### # load object utils::data( myGOs, package="ViSEAGO" ) ################### # barplot for the count of GO terms ViSEAGO::GOcount( myGOs)