coords | Return or set the coords in a Heatmap |
coords-method | Return or set the coords in a Heatmap |
coords<- | Return or set the coords in a Heatmap |
coords<--method | Return or set the coords in a Heatmap |
CoverageHeatmap | Generate a Heatmap of coverage |
CoverageHeatmap-method | Generate a Heatmap of coverage |
default_color | Predifined color palettes from RColorBrewer + Rainbow |
getScale | Make an appropriate scale for a heatmap |
Heatmap | Function to create a heatmap object |
Heatmap-class | An S4 class to represent a heatmap |
HeatmapExamples | Data for man page examples |
heatmapOptions | Generate default options for a Heatmap |
hm | Data for man page examples |
hm2 | Data for man page examples |
image | Return or set the image in a Heatmap |
image-method | Return or set the image in a Heatmap |
image<- | Return or set the image in a Heatmap |
image<--method | Return or set the image in a Heatmap |
label | Return or set the label in a Heatmap |
label-method | Return or set the label in a Heatmap |
label<- | Return or set the label in a Heatmap |
label<--method | Return or set the label in a Heatmap |
length-method | Return the number of sequences in a heatmap |
mat | Data for man page examples |
metadata | Return or set the metadata in a Heatmap |
metadata-method | Return or set the metadata in a Heatmap |
metadata<- | Return or set the metadata in a Heatmap |
metadata<--method | Return or set the metadata in a Heatmap |
nseq | Return or set nseq in a Heatmap |
nseq-method | Return or set nseq in a Heatmap |
nseq<- | Return or set nseq in a Heatmap |
nseq<--method | Return or set nseq in a Heatmap |
PatternHeatmap | Generate a Heatmap of patterns in DNA sequence |
PatternHeatmap-method | Generate a Heatmap of patterns in DNA sequence |
plotHeatmap | Plot a Heatmap object to the device |
plotHeatmap-method | Plot a Heatmap object to the device |
plotHeatmapList | Plot a list of heatmaps |
plotHeatmapMeta | Plot a Meta-region plot from heatmaps |
plotPatternDensityMap | Plot heatmaps for several patterns in DNA sequence |
plotPatternDensityMap-method | Plot heatmaps for several patterns in DNA sequence |
plot_clusters | Plot partition in a separate panel |
plot_legend | Plot a color legend for a heatmap |
PWMScanHeatmap | Generate a Heatmap of PWM Scores in DNA sequnce |
PWMScanHeatmap-method | Generate a Heatmap of PWM Scores in DNA sequnce |
rev-method | Reflect a heatmap in the x axis |
rle_list | Data for man page examples |
scale | Return or set the scale in a Heatmap |
scale-method | Return or set the scale in a Heatmap |
scale<- | Return or set the scale in a Heatmap |
scale<--method | Return or set the scale in a Heatmap |
smoothHeatmap | Smooth a heatmap |
smoothHeatmap-method | Smooth a heatmap |
string_set | Data for man page examples |
tata_pwm | Data for man page examples |
width-method | Return the width of sequence represented in a heatmap |
windows | Data for man page examples |
xm | Generate co-ordinates for each row of the image matrix of a Heatmap |
xm-method | Generate co-ordinates for each row of the image matrix of a Heatmap |
ym | Generate co-ordinates for each column of the image matrix of a Heatmap |
ym-method | Generate co-ordinates for each column of the image matrix of a Heatmap |