computeInfRV |
Compute inferential relative variance (InfRV) |
deswish |
deswish: DESeq2-apeglm With Inferential Samples Helps |
labelKeep |
Label rows to keep based on minimal count |
makeSimSwishData |
Make simulated data for swish for examples/testing |
plotInfReps |
Plot inferential replicates for a gene or transcript |
plotMASwish |
MA plot |
readEDS |
readEDS - a utility function for quickly reading in Alevin's EDS format |
scaleInfReps |
Scale inferential replicate counts |
swish |
swish: SAMseq With Inferential Samples Helps |