changelog version 1.2.17 - 1.2.23 - fixed ChIP-Seq vignette - added to imports: GenomicRanges, GenomicAlignments - vignette updates version 1.2.13 - 1.2.16 - several vignette updates - fix for missing systemPipeRdata - fix for name of HTML page on Bioc page version 1.2.12 - fixed minor bug in runCommandline version 1.2.10 - 1.2.11 - fixed PE read support in preprocessReads version 1.2.3 - 1.2.9 - vignette updates - added sample Makefile version 1.2.1 - updated readComp - corrected typo for systemArgs when NULL is assigned to sysma version 1.1.16 - added functions for variant filtering and annotation version 1.1.15 - support for GATK and BCFtools version 1.1.12-1.1.14 - vignette/man updates version 1.1.11 - added DESeq2 support version 1.1.9-1.1.10 - vignette/man updates version 1.1.8 - added preprocessReads function version 1.1.7 - support for R-based software generating input/output files - support for pipelines with several system command steps version 1.1.6 - added new *.param files version 1.1.5 - vignette updates version 1.1.4 - updated vennPlot version 1.1.3 - added functions: overLapper, vennPlot and olBarplot - eliminated warning in seeFastq version 1.1.2 - documentation update version 0.99.0 - 1.1.1 - initial version on Bioconductor