Changes in version 1.5: o Added a new function champ.TrueMethyl() that allows for calculation of hmC from samples run with traditional bisulfite and oxidative bisulfite True Methyl Kit from Cambridige Epigenetix o Updated CITATION o Updated contact email o Updated champ.lasso to include all updates describe in Butcher et al. 2015 o Added data from Nordland et al. to allow filtering of multiple aligning probes and SNPs, options to filter this by changing multi.hit or snp.hit to TRUE. o changed default of not include BMIQ plots of every sample o Edited the data in probes.features to eliminate extra columns o Fixed a bug in champ.SNP to allow sample.groups with names that are subset of each other o Vignette will be updated soon