GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzing genetic data from samples with population structure and/or relatedness


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Documentation for package ‘GENESIS’ version 1.0.0

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GENESIS-package GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzing genetic data from samples with population structure and/or relatedness
GENESIS GENetic EStimation and Inference in Structured samples (GENESIS): Statistical methods for analyzing genetic data from samples with population structure and/or relatedness
HapMap_ASW_MXL_KINGmat Matrix of Pairwise Kinship Coefficient Estimates for the combined HapMap ASW and MXL Sample found with the KING-robust estimator from the KING software.
king2mat Convert KING text output to an R Matrix
pcair PC-AiR: Principal Components Analysis in Related Samples
pcairPartition Partition a sample into an ancestry representative 'unrelated subset' and a 'related subset'
plot.pcair PC-AiR: Plotting PCs
print.pcair PC-AiR: Principal Components Analysis in Related Samples
print.summary.pcair PC-AiR: Principal Components Analysis in Related Samples
summary.pcair PC-AiR: Principal Components Analysis in Related Samples