Identify Differentially Expressed Genes from RNA-seq data


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Documentation for package ‘DEGseq’ version 1.22.0

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DEGexp DEGexp: Identifying Differentially Expressed Genes from gene expression data
DEGexp2 DEGexp2: Identifying Differentially Expressed Genes from gene expression data
DEGseq DEGseq: Identify Differentially Expressed Genes from RNA-seq data
GeneExpExample1000 GeneExpExample1000
GeneExpExample5000 GeneExpExample5000
getGeneExp getGeneExp: Count the number of reads and calculate the RPKM for each gene
kidneyChr21.bed kidneyChr21.bed
kidneyChr21Bowtie kidneyChr21Bowtie
liverChr21.bed liverChr21.bed
liverChr21Bowtie liverChr21Bowtie
readGeneExp readGeneExp: read gene expression values to a matrix
refFlatChr21 refFlatChr21
samWrapper samWrapper: A Wrapper (with some modification) of the functions in the package samr to identify differentially expressed genes for the RNA-seq data from two groups of paired or unpaired samples.