SiRNA correction for seed mediated off-target effect


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Documentation for package ‘scsR’ version 1.4.0

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add_rank_col add_rank_col
add_seed add_seed
benchmark_shared_hits benchmark_shared_hits
bydf bydf
bydfa bydf
check_consistency check_consistency
compare_sorted_geneSets compare_sorted_geneSets
create_sd_matrix create_sd_matrix
delColDf delColDf
delete_undefined_rows delete_undefined_rows
enrichment_geneSet enrichment_geneSet
enrichment_heatmap enrichment_heatmap
get_sd_quant get_sd_quant
get_seed_oligos_df get_seed_oligos_df
intersectAll intersectAll
launch_RSA launch_RSA
median_replicates median_replicates
miRBase_20 miRBase version 20 mature sequences (homo sapiens)
OPIrsa OPIrsa
OPIrsaScore OPIrsaScore
plot_effective_seeds_head plot seeds utility methods
plot_screen_hits plot_screen_hits
plot_screen_seeds_count plot seeds utility methods
plot_seeds_oligo_count plot seeds utility methods
plot_seed_score_sd plot seeds utility methods
randomizeInner randomizeInner
randomSortOnVal randomSortOnVal
removeSharedOffTargets removeSharedOffTargets
renameColDf renameColDf
replace_non_null_elements replace_non_null_elements
seeds_analysis seeds_analysis
seed_correction seed_correction
seed_correction_pooled seed_correction_pooled
seed_removal seed_removal
sortInner sortInner
split_df split_df
transcribe_seqs transcribe_seqs
uuk_screen cell number phenotype of the Uukuniemi QIAGEN siRNA genome wide screen
uuk_screen_dh cell number phenotype of the Uukuniemi DHARMACON siRNA genome wide screen