Statistical Tools for volume data from 2D Gel Electrophoresis


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Documentation for package ‘prot2D’ version 1.4.0

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prot2D-package Statistics Tools for data issued from a 2D Gel Electrophoresis
efronT.Prot Various Tests for finding differentially expressed proteins in 2-DE experiments
ES.prot Create an ExpressionSet containing 2D Gel Volume Data
modT.Prot Various Tests for finding differentially expressed proteins in 2-DE experiments
Norm.qt Normalize 2D Gel Volume data using Quantiles Normalization
Norm.vsn Normalize 2D Gel Volume data using VSN
pecten Pecten Dataset
pecten.fac pecten.fac Dataset
prot2D Statistics Tools for data issued from a 2D Gel Electrophoresis
RIplot Ratio-Intensity Plot for 2D Gel Volume data
robust.fdr "robust FDR" estimation
samT.Prot Various Tests for finding differentially expressed proteins in 2-DE experiments
shrinkT.Prot Various Tests for finding differentially expressed proteins in 2-DE experiments
Sim.Prot.2D Simulate 2D Gel volume data
ttest.Prot Various Tests for finding differentially expressed proteins in 2-DE experiments
variousT.Prot Various Tests for finding differentially expressed proteins in 2-DE experiments