ncdfFlow: A package that provides ncdf based storage for flow cytometry data.


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Documentation for package ‘ncdfFlow’ version 2.12.0

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ncdfFlow-package ncdfFlow: A package that provides CDF storage based flow cytometry data analysis.
as.flowSet convert from a 'ncdfFlowSet' to a 'flowSet'
clone.ncdfFlowSet Clone a ncdfFlowSet
colnames-method a class that stores multiple ncdfFlowSet objects
colnames<- a class for storing flow cytometry raw data in HDF5 format
colnames<--method a class for storing flow cytometry raw data in HDF5 format
compensate-method a class for storing flow cytometry raw data in HDF5 format
densityplot-method a class that stores multiple ncdfFlowSet objects
densityplot-method a class for storing flow cytometry raw data in HDF5 format
filter-method a class that stores multiple ncdfFlowSet objects
getFileName get the cdf file name associated with ncdfFlowSet object
getIndices extract the event indices of one or multiple samples from ncdfFlowSet
getIndices-method extract the event indices of one or multiple samples from ncdfFlowSet
initIndices initialize the event indices for the entire ncdfFlowSet with NA
initIndices-method initialize the event indices for the entire ncdfFlowSet with NA
lapply-method lapply method for ncdfFlowList
length-method a class that stores multiple ncdfFlowSet objects
load_ncfs save/load a ncdfFlowSet object to/from disk.
ncdfFlow ncdfFlow: A package that provides CDF storage based flow cytometry data analysis.
ncdfFlowList a class that stores multiple ncdfFlowSet objects
ncdfFlowList-class a class that stores multiple ncdfFlowSet objects
ncdfFlowSet create ncdfFlowSet from flowFrame (not supported)
ncdfFlowSet-class a class for storing flow cytometry raw data in HDF5 format
ncdfFlowSet-method create ncdfFlowSet from flowFrame (not supported)
ncfsApply apply method for ncdfFlowSet (for internal use)
ncfsApply-method apply method for ncdfFlowSet (for internal use)
pData-method a class that stores multiple ncdfFlowSet objects
pData<--method a class that stores multiple ncdfFlowSet objects
phenoData-method a class that stores multiple ncdfFlowSet objects
phenoData<--method a class that stores multiple ncdfFlowSet objects
rbind2-method combine multiple ncdfFlowSet objects into one
read.ncdfFlowSet create ncdfFlowSet from FCS files
read.ncdfFlowset create ncdfFlowSet from FCS files
replacement method for ncdfFlowSet write the flow data from a 'flowFrame' to 'ncdfFlowSet'
sampleNames-method a class that stores multiple ncdfFlowSet objects
sampleNames<- a class for storing flow cytometry raw data in HDF5 format
sampleNames<--method a class for storing flow cytometry raw data in HDF5 format
save_ncfs save/load a ncdfFlowSet object to/from disk.
show-method a class that stores multiple ncdfFlowSet objects
show-method a class for storing flow cytometry raw data in HDF5 format
split-method a class that stores multiple ncdfFlowSet objects
split-method split a 'ncdfFlowSet' object.
Subset-method subset a ncdfFlowSet by filter
subset.ncdfFlowList subset the ncdfFlowSet/ncdfFlowList based on 'pData'
subset.ncdfFlowSet subset the ncdfFlowSet/ncdfFlowList based on 'pData'
transform-method a class for storing flow cytometry raw data in HDF5 format
unlink-method delete the cdf file associated with the ncdfFlowSet object
updateIndices update the event indices of the target sample in ncdfFlowSet
updateIndices-method update the event indices of the target sample in ncdfFlowSet
xyplot-method a class that stores multiple ncdfFlowSet objects
xyplot-method a class for storing flow cytometry raw data in HDF5 format
[-method a class that stores multiple ncdfFlowSet objects
[-method subsetting by sampleNames,channels(not for events) methods
[[-method a class that stores multiple ncdfFlowSet objects
[[-method extract a 'flowFrame' object from 'ncdfFlowSet'
[[<--method write the flow data from a 'flowFrame' to 'ncdfFlowSet'