flowMatch-package |
Flow cytometry data cross-sample comparison |
crossMap-class |
Statistics of mapping the test samples and the reference sample (or the proxy reference) |
FRmapping |
Multiple sample comparison with a user-defined reference |
FRmappingSimple |
Multiple sample comparisons |
FRstats-class |
FR statistics and p-values generated from one single draw of the population pair comparison |
FRvalsPerm-class |
Statistics generated from the permuted distribution of the observed FR statistics |
getCrossList |
Statistics of mapping the test samples and the reference sample (or the proxy reference) |
getCrossList-method |
Statistics of mapping the test samples and the reference sample (or the proxy reference) |
getFR |
F-R test for one population comparison |
getFRest |
F-R statistic estimates across two samples |
getFRmapPnorms |
Statistics of mapping the test samples and the reference sample (or the proxy reference) |
getFRmapPnorms-method |
Statistics of mapping the test samples and the reference sample (or the proxy reference) |
getFRmapPnulls |
Statistics of mapping the test samples and the reference sample (or the proxy reference) |
getFRmapPnulls-method |
Statistics of mapping the test samples and the reference sample (or the proxy reference) |
getFRmapStats |
Statistics of mapping the test samples and the reference sample (or the proxy reference) |
getFRmapStats-method |
Statistics of mapping the test samples and the reference sample (or the proxy reference) |
getFRmat |
F-R tests for two-sampbetween two samples |
getFRstats |
FR statistics and p-values generated from one single draw of the population pair comparison |
getFRstats-method |
FR statistics and p-values generated from one single draw of the population pair comparison |
getFRvalsPerm |
Compute statistics for the empirical distribution |
getMatched |
Identify matched population pairs |
getMatchMat |
Matching information about a single cross-sample comparison |
getMatchMat-method |
Matching information about a single cross-sample comparison |
getMatchPairs |
Matching information about a single cross-sample comparison |
getMatchPairs-method |
Matching information about a single cross-sample comparison |
getNewPops |
Data and summary information of the proxy reference sample |
getNewPops-method |
Data and summary information of the proxy reference sample |
getPairList |
Information required to making a proxy reference sample |
getPairList-method |
Information required to making a proxy reference sample |
getPnorm |
FR statistics and p-values generated from one single draw of the population pair comparison |
getPnorm-method |
FR statistics and p-values generated from one single draw of the population pair comparison |
getPnulls |
Statistics generated from the permuted distribution of the observed FR statistics |
getPnulls-method |
Statistics generated from the permuted distribution of the observed FR statistics |
getPopFilt |
List of population pairs to be compared during multiple-sample comparisons |
getPopFilt-method |
List of population pairs to be compared during multiple-sample comparisons |
getRefData |
Data and summary information of the proxy reference sample |
getRefData-method |
Data and summary information of the proxy reference sample |
getSampleInfo |
List of directories and sample files |
getSampleInfo-method |
List of directories and sample files |
getSomePops |
Make prefiltering matrix for each test sample |
getWnulls |
Statistics generated from the permuted distribution of the observed FR statistics |
getWnulls-method |
Statistics generated from the permuted distribution of the observed FR statistics |
makeCrossMap |
Make mapping information for the meta set of populations |
makeRefMap |
Make mapping information for the proxy reference sample |
makeRefSample |
Make a proxy reference sample |
makeSampleInfo |
Prepare background files to downstream data processing |
matchMat-class |
Matching information about a single cross-sample comparison |
permutePops |
Permute cell population labels across two samples |
refMap-class |
Information required to making a proxy reference sample |
refSample-class |
Data and summary information of the proxy reference sample |
SampleInfo-class |
List of directories and sample files |
somePops-class |
List of population pairs to be compared during multiple-sample comparisons |
statCrossLists |
summary statistic across elements of lists |