Gene Set Analysis of (Rare) Copy Number Variants


[Up] [Top]

Documentation for package ‘cnvGSA’ version 1.10.0

Help Pages

cnvGSA-package Gene-Set Analysis of (Rare) Copy Number Variants
burdenGs Class '"CnvGSAOutput"'
burdenGs-method Class '"CnvGSAOutput"'
burdenSample Class '"CnvGSAOutput"'
burdenSample-method Class '"CnvGSAOutput"'
cnvData Class '"CnvGSAInput"'
cnvData-method Class '"CnvGSAInput"'
cnvData-method Class '"CnvGSAOutput"'
cnvData<- Class '"CnvGSAInput"'
cnvData<--method Class '"CnvGSAInput"'
cnvGSA Gene-Set Analysis of (Rare) Copy Number Variants
cnvGSAexportBurdenStats Export burden statistics
cnvGSAFisher CNV/gene-set association using Fisher Exact Test
CnvGSAInput Class '"CnvGSAInput"'
CnvGSAInput-class Class '"CnvGSAInput"'
CnvGSAOutput Class '"CnvGSAOutput"'
CnvGSAOutput-class Class '"CnvGSAOutput"'
enrRes Class '"CnvGSAOutput"'
enrRes-method Class '"CnvGSAOutput"'
geneData Class '"CnvGSAInput"'
geneData-method Class '"CnvGSAInput"'
geneData-method Class '"CnvGSAOutput"'
geneData<- Class '"CnvGSAInput"'
geneData<--method Class '"CnvGSAInput"'
getCnvGenes Determine genes hit by CNVs
gsData Class '"CnvGSAInput"'
gsData-method Class '"CnvGSAInput"'
gsData<- Class '"CnvGSAInput"'
gsData<--method Class '"CnvGSAInput"'
params Class '"CnvGSAInput"'
params-method Class '"CnvGSAInput"'
params<- Class '"CnvGSAInput"'
params<--method Class '"CnvGSAInput"'
readGMT Read gene-sets from a .gmt file
readGVF Read CNVs from a .gvf file
readParamsRFile Read cnvGSA parameters from a file (R format)
summary-method cnvGSA methods for function 'summary'
summary-methods cnvGSA methods for function 'summary'