MIMOSA-package | MIMOSA: Mixture Models for Single Cell Assays |
.fitMCMC | Fit the MIMOSA model via MCMC |
asinh_trans | asinh_trans |
BetaMixResult-class | The output of fitting Beta-Binomial EM implementation 'BetaMix'. |
boxplotMIMOSAResultList | boxplotMIMOSAResultList |
combine.MIMOSA | Combine MIMOSAResultList objects |
ConstructMIMOSAExpressionSet | A wrapper for constructing an Expression Set for MIMOSA |
countsTable | Extract the table of counts from a MIMOSA model |
countsTable-method | Extract the table of counts from a MIMOSA model |
countsTable.MIMOSAResultList | Extract the table of counts from a MIMOSA model |
fdr | Compute the fdr (q-value) from posterior probabilities |
fdr.matrix | Compute the fdr (q-value) from posterior probabilities |
fdr.MIMOSAResult | Compute the fdr (q-value) from posterior probabilities |
fdr.MIMOSAResultList | Compute the fdr (q-value) from posterior probabilities |
getW | Extract the posterior probabilities of response from a MIMOSA model |
getW.MIMOSAResult | Extract the posterior probabilities of response from a MIMOSA model |
getW.MIMOSAResultList | Extract the posterior probabilities of response from a MIMOSA model |
getZ | Extract the posterior probabilities of response from a MIMOSA model |
getZ.MIMOSAResult | Extract the posterior probabilities of response from a MIMOSA model |
getZ.MIMOSAResultList | Extract the posterior probabilities of response from a MIMOSA model |
ICS | Stimulated and unstimulated T-cell counts for an ICS assay |
MDMix | EM fitting of the Multinomial Dirichlet MIMOSA model. |
MIMOSA | Fit a MIMOSA Model |
MIMOSA-method | Fit a MIMOSA Model |
MIMOSAExpressionSet | Construct an ExpressionSet for MIMOSA |
MIMOSAResult | Stores the result of a MIMOSA fitted model |
MIMOSAResult-class | Stores the result of a MIMOSA fitted model |
pData-method | pData extract the phenoData table from a MIMOSA result |
pData.MIMOSAResultList | pData extract the phenoData table from a MIMOSA result |
print.MIMOSAResultList | Print a MIMOSAResultList |
show | show |
show-method | show |
volcanoPlot | Volcano plot for a MIMOSA model |