KCsmart-package | KCsmart |
calcSpm | KCsmart wrapper |
calcSpmCollection | KCsmart Comparative wrapper |
compareSpmCollection | KCsmart Comparative calculate null distribution |
compKc-class | KC smart comparative |
compKcSigRegions-class | KC smart comparative |
findSigLevelFdr | This function has not been properly implemented yet |
findSigLevelTrad | Find significance level |
getSigRegionsCompKC | KCsmart Comparative calculate the signficant regions |
getSigSegments | Retrieve the significantly gained and lost regions including the corresponding, original probes |
hsMirrorLocs | Mirror locations of the human genome |
hsSampleData | Homo Sapiens artificial cgh data set |
idPoints | Identify points in sample point matrix plot |
initialize-method | Class "KcghData" |
initialize-method | Class "KcghDataMirror" |
initialize-method | Class "KcghDataSplit" |
initialize-method | Class "KcghDataSum" |
initialize-method | KC smart comparative |
initialize-method | Class "probeAnnotation" |
KCData-class | Internal class "KCData" |
KcghData-class | Class "KcghData" |
KcghDataMirror-class | Class "KcghDataMirror" |
KcghDataSplit-class | Class "KcghDataSplit" |
KcghDataSum-class | Class "KcghDataSum" |
KCsmart | KCsmart |
length-method | Internal class "KCData" |
mmMirrorLocs | Mirror locations of the mouse genome |
plot | Plot a sample point matrix |
plot-method | KC smart comparative |
plot-method | Plot a sample point matrix |
plotScaleSpace | Plot multiple significant regions in one figure |
probeAnnotation-class | Class "probeAnnotation" |
samplePointMatrix-class | Sample point matrix |
show-method | KC smart comparative |
show-method | KC smart comparative |
show-method | Sample point matrix |
show-method | Significant segments |
show-method | Sample point matrix collection |
sigSegments-class | Significant segments |
sort-method | Class "KcghData" |
sort-method | Class "KcghDataSum" |
spmCollection-class | Sample point matrix collection |
unlist-method | Internal class "KCData" |
write.table | Write summary of the significant regions to a table |
write.table-method | Write summary of the significant regions to a table |
[-method | Class "probeAnnotation" |
[[-method | Internal class "KCData" |
[[<--method | Internal class "KCData" |