ABSDataSet |
ABSDataSet object and constructors |
ABSDataSet-class |
ABSDataSet object and constructors |
ABSSeq |
Differential expression analysis based on the absolute difference. |
calPara |
Calculate parameters for generalized Poisson test (GPTest) |
counts |
Accessors for the 'counts' slot of a ABSDataSet object. |
counts-method |
Accessors for the 'counts' slot of a ABSDataSet object. |
counts<- |
Accessors for the 'counts' slot of a ABSDataSet object. |
counts<--method |
Accessors for the 'counts' slot of a ABSDataSet object. |
estimateSizeFactorsForMatrix |
Low-level function to estimate size factors with robust regression. |
GPTest |
Testing the differential expression |
groups |
Accessors for the 'groups' slot of a ABSDataSet object. |
groups-method |
Accessors for the 'groups' slot of a ABSDataSet object. |
groups<- |
Accessors for the 'groups' slot of a ABSDataSet object. |
groups<--method |
Accessors for the 'groups' slot of a ABSDataSet object. |
normalFactors |
Estimating size factors from the reads count table |
normMethod |
Accessors for the 'normMethod' slot of a ABSDataSet object. |
normMethod-method |
Accessors for the 'normMethod' slot of a ABSDataSet object. |
normMethod<- |
Accessors for the 'normMethod' slot of a ABSDataSet object. |
normMethod<--method |
Accessors for the 'normMethod' slot of a ABSDataSet object. |
plotDifftoBase |
Plot absolute differencs |
results |
Accessor functions for the result from a ABSDataSet |
results-method |
Accessor functions for the result from a ABSDataSet |
simuN5 |
Simulated study with random outliers |
sizeFactors |
Accessors for the 'sizeFactor' slot of a ABSDataSet object. |
sizeFactors-method |
Accessors for the 'sizeFactor' slot of a ABSDataSet object. |
sizeFactors<- |
Accessors for the 'sizeFactor' slot of a ABSDataSet object. |
sizeFactors<--method |
Accessors for the 'sizeFactor' slot of a ABSDataSet object. |
SumInfo |
An S4 class that stores a string. |
SumInfo-class |
ABSDataSet object and constructors |
[[<--method |
ABSDataSet object and constructors |