QUALIFIER-package |
QUALIFIER: A package that provides automated flow data quality assessment based on gated cell populations |
clearCheck |
Perform the quality assessment for the qaTask object |
db |
The example QA data included in the package |
description,qaTask |
a class for storing important information of flow cytometry data quality assessment task |
formula,qaTask |
a class for storing important information of flow cytometry data quality assessment task |
getData,qaTask |
a class for storing important information of flow cytometry data quality assessment task |
getName,qaTask |
a class for storing important information of flow cytometry data quality assessment task |
getPop,qaTask |
a class for storing important information of flow cytometry data quality assessment task |
getQAStats |
Get statistics from gated data for QA check. |
getQAStats-method |
Get statistics from gated data for QA check. |
getQAStats-methods |
Get statistics from gated data for QA check. |
highlight |
a class for storing important information of flow cytometry data quality assessment task |
highlight-method |
a class for storing important information of flow cytometry data quality assessment task |
highlight<- |
a class for storing important information of flow cytometry data quality assessment task |
highlight<--method |
a class for storing important information of flow cytometry data quality assessment task |
htmlReport |
a class for storing important information of flow cytometry data quality assessment task |
htmlReport-method |
a class for storing important information of flow cytometry data quality assessment task |
htmlReport<- |
a class for storing important information of flow cytometry data quality assessment task |
htmlReport<--method |
a class for storing important information of flow cytometry data quality assessment task |
initDB |
Initializes the data environment |
ITNQASTUDY |
The example QA data included in the package |
load_db |
save/load the data environment to/from disk |
outlier.cutoff |
outliers detection functions |
outlier.norm |
outliers detection functions |
outlier.t |
outliers detection functions |
outlierFunctions |
outliers detection functions |
plot |
plot the statistics for a particular cell population of a group of samples |
plot-method |
plot the statistics for a particular cell population of a group of samples |
plot-methods |
plot the statistics for a particular cell population of a group of samples |
plotType,qaTask |
a class for storing important information of flow cytometry data quality assessment task |
proportion.outliers.mle |
outliers detection functions |
proportion.outliers.robust |
outliers detection functions |
qaCheck |
Perform the quality assessment for the qaTask object |
qaCheck-method |
Perform the quality assessment for the qaTask object |
qaCheck-methods |
Perform the quality assessment for the qaTask object |
qaCheckList |
The example QA data included in the package |
qaID,qaTask |
a class for storing important information of flow cytometry data quality assessment task |
qaLevel,qaTask |
a class for storing important information of flow cytometry data quality assessment task |
qaPreprocess |
Preprocessing for QA check |
qaReport |
create quality assessment report |
qaReport-method |
create quality assessment report |
qaReport-methods |
create quality assessment report |
qaTask |
a class for storing important information of flow cytometry data quality assessment task |
qaTask-class |
a class for storing important information of flow cytometry data quality assessment task |
qoutlier |
outliers detection functions |
qpar |
a class for storing important information of flow cytometry data quality assessment task |
qpar-method |
a class for storing important information of flow cytometry data quality assessment task |
qpar<- |
a class for storing important information of flow cytometry data quality assessment task |
qpar<--method |
a class for storing important information of flow cytometry data quality assessment task |
QUALIFIER |
QUALIFIER: A package that provides automated flow data quality assessment based on gated cell populations |
queryStats |
Perform the quality assessment for the qaTask object |
queryStats-method |
Perform the quality assessment for the qaTask object |
read.qaTask |
Loading 'qaTask's from a csv file |
rFunc |
a class for storing important information of flow cytometry data quality assessment task |
rFunc-method |
a class for storing important information of flow cytometry data quality assessment task |
rFunc<- |
a class for storing important information of flow cytometry data quality assessment task |
rFunc<--method |
a class for storing important information of flow cytometry data quality assessment task |
rlm |
outliers detection functions |
saveToDB |
Save the gating set and annotation data into the data environment. |
save_db |
save/load the data environment to/from disk |
scatterPar |
a class for storing important information of flow cytometry data quality assessment task |
scatterPar-method |
a class for storing important information of flow cytometry data quality assessment task |
scatterPar<- |
a class for storing important information of flow cytometry data quality assessment task |
scatterPar<--method |
a class for storing important information of flow cytometry data quality assessment task |
show,qaTask |
a class for storing important information of flow cytometry data quality assessment task |
tubesevents |
The example QA data included in the package |