GOexpress-package |
Visualise microarray and RNAseq data with gene ontology annotations. |
AlvMac |
Sample data from a RNAseq experiment. |
AlvMac_results |
Sample output from the 'GO_analyse()' function on an RNAseq experiment. |
cluster_GO |
Generates a hierarchical clustering of the samples |
expression_plot |
Plots the expression profile of a gene by levels of a factor |
expression_plot_symbol |
Plots the expression profile of a gene by levels of a factor |
expression_profiles |
Plots the individual expression profile of a gene in samples series |
expression_profiles_symbol |
Plots the individual expression profile of a gene in samples series |
GOexpress |
Visualise microarray and RNAseq data with gene ontology annotations. |
GO_analyse |
Identifies gene ontologies clustering samples according to predefined factor. |
heatmap_GO |
Generates a heatmap and hierarchical clustering of the samples and the genes |
hist_scores |
Plots the distribution of scores following an GOexpress analysis. |
list_genes |
Returns the genes associated with a Gene Ontology |
microarray2dataset |
Table mapping probeset identifier prefixes to datasets in the Ensembl BioMart. |
overlap_GO |
Shared genes between a list of GO terms. |
plot_design |
Plot Univariate Effects for genes associated with a Gene Ontology |
prefix2dataset |
Table mapping Ensembl gene identifier prefixes to BioMart datasets. |
quantiles_scores |
Returns the quantiles of scores following an GOexpress analysis. |
rerank |
Reorder the result variable by alternative metrics. |
subEset |
Subset an ExpressionSet to values of phenotypic data columns. |
subset_scores |
Returns a filtered list from GO_analyse results. |
table_genes |
Returns a table listing the genes associated with a given Gene Ontology |