seqLogo

Sequence logos for DNA sequence alignments

Bioconductor version: 2.9

seqLogo takes the position weight matrix of a DNA sequence motif and plots the corresponding sequence logo as introduced by Schneider and Stephens (1990).

Author: Oliver Bembom

Maintainer: Oliver Bembom <oliver.bembom at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("seqLogo")

To cite this package in a publication, start R and enter:

    citation("seqLogo")

Documentation

PDF	R Script	Sequence logos for DNA sequence alignments
PDF		Reference Manual

Details

biocViews	SequenceMatching
Depends	methods, grid
Imports
Suggests
System Requirements
License	LGPL (>= 2)
URL
Depends On Me	cosmo, rGADEM
Imports Me	rGADEM
Suggests Me	BCRANK
Version	1.20.0
Since	Bioconductor 2.0 (R-2.5)

Package Downloads

Package Source	seqLogo_1.20.0.tar.gz
Windows Binary	seqLogo_1.20.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	seqLogo_1.20.0.tgz
Package Downloads Report	Download Stats

Workflows »

Common Bioconductor workflows include:

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Hosting provided by Fred Hutchinson Cancer Research Center