sagenhaft

Collection of functions for reading and comparing SAGE libraries

Bioconductor version: 2.9

This package implements several functions useful for analysis of gene expression data by sequencing tags as done in SAGE (Serial Analysis of Gene Expressen) data, i.e. extraction of a SAGE library from sequence files, sequence error correction, library comparison. Sequencing error correction is implementing using an Expectation Maximization Algorithm based on a Mixture Model of tag counts.

Author: Tim Beissbarth <beissbarth at wehi.edu.au>, with contributions from Gordon Smyth <smyth at wehi.edu.au> and Lavinia Hyde <hyde at wehi.edu.au>.

Maintainer: Tim Beissbarth <beissbarth at wehi.edu.au>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("sagenhaft")

To cite this package in a publication, start R and enter:

    citation("sagenhaft")

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