procoil

Prediction of Oligomerization of Coiled Coil Proteins

Bioconductor version: 2.9

The procoil package allows to predict whether a coiled coil sequence (amino acid sequence plus heptad register) is more likely to form a dimer or more likely to form a trimer. The predict function not only computes the prediction itself, but also a profile which allows to determine the strengths to which the individual residues are indicative for either class. Profiles can also be plotted and exported to files.

Author: Ulrich Bodenhofer

Maintainer: Ulrich Bodenhofer <bodenhofer at bioinf.jku.at>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("procoil")

To cite this package in a publication, start R and enter:

    citation("procoil")

Documentation

PDF R Script PrOCoil - A Web Service and an R Package for Predicting the Oligomerization of Coiled-Coil Proteins
PDF   Reference Manual
Text   NEWS

Details

biocViews Proteomics, Classification
Depends R (>= 2.10.1), methods
Imports methods, stats, graphics, utils
Suggests Biostrings
System Requirements
License GPL (>= 2)
URL http://www.bioinf.jku.at/software/procoil/
Depends On Me
Imports Me
Suggests Me
Version 1.4.0
Since Bioconductor 2.8 (R-2.13)

Package Downloads

Package Source procoil_1.4.0.tar.gz
Windows Binary procoil_1.4.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary procoil_1.4.0.tgz
Package Downloads Report Download Stats

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