graphite

GRAPH Interaction from pathway Topological Environment

Bioconductor version: 2.9

Graph objects from pathway topology derived from NCI, KEGG, Biocarta and Reactome databases.

Author: Gabriele Sales <gabriele.sales at unipd.it>, Enrica Calura <enrica.calura at gmail.com>, Chiara Romualdi <chiara.romualdi at unipd.it>

Maintainer: Gabriele Sales <gabriele.sales at unipd.it>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("graphite")

To cite this package in a publication, start R and enter:

    citation("graphite")

PDF	R Script	GRAPH Interaction from pathway Topological Environment
PDF		Reference Manual

biocViews	Pathways
Depends	R (>= 2.10), graph
Imports	AnnotationDbi, graph, graphics, methods, org.Hs.eg.db, stats, utils
Suggests	DEGraph(>= 1.4), hgu133plus2.db, RCytoscape(>= 1.2), SPIA(>= 2.2), topologyGSA (>= 1.0)
System Requirements
License	AGPL-3
URL
Depends On Me
Imports Me
Suggests Me
Version	1.0.0
Since	Bioconductor 2.9 (R-2.14)

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