ReQON

Recalibrating Quality Of Nucleotides

Bioconductor version: 2.9

Algorithm for recalibrating the base quality scores for aligned sequencing data in BAM format.

Author: Christopher Cabanski, Keary Cavin, Chris Bizon

Maintainer: Christopher Cabanski <cabanski at email.unc.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("ReQON")

To cite this package in a publication, start R and enter:

    citation("ReQON")

Documentation

PDF R Script ReQON Tutorial
PDF   Reference Manual

Details

biocViews Sequencing, HighThroughputSequencing, Preprocessing, QualityControl
Depends R (>= 2.13.0), Rsamtools, seqbias
Imports rJava, graphics, stats, utils, grDevices
Suggests
System Requirements Java version >= 1.6
License GPL version 2
URL
Depends On Me
Imports Me
Suggests Me
Version 1.0.0
Since Bioconductor 2.9 (R-2.14)

Package Downloads

Package Source ReQON_1.0.0.tar.gz
Windows Binary ReQON_1.0.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary
Package Downloads Report Download Stats

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