PGSEA
Parametric Gene Set Enrichment Analysis
Bioconductor version: 2.9
Parametric Analysis of Gene Set Enrichment
Author: Kyle Furge <kyle.furge at vai.org> and Karl Dykema <karl.dykema at vai.org>
Maintainer: Karl Dykema <karl.dykema at vai.org>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("PGSEA")
To cite this package in a publication, start R and enter:
citation("PGSEA")
Documentation
| R Script | HOWTO: PGSEA | |
| R Script | HOWTO: PGSEA Example Workflow | |
| Reference Manual |
Details
| biocViews | Microarray |
| Depends | GO.db, KEGG.db, AnnotationDbi, annaffy, methods, Biobase(>= 2.5.5) |
| Imports | |
| Suggests | GSEABase, GEOquery, org.Hs.eg.db, hgu95av2.db, limma |
| System Requirements | |
| License | GPL-2 |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Version | 1.28.0 |
| Since | Bioconductor 2.0 (R-2.5) |
Package Downloads
| Package Source | PGSEA_1.28.0.tar.gz |
| Windows Binary | PGSEA_1.28.0.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | PGSEA_1.28.0.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Annotation
- Variants
- Flow Cytometry and other assays
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