gageData

Auxillary data for gage package

Bioconductor version: 2.8

This is a supportive data package for the software package, gage. However, the data supplied here are also useful for gene set or pathway analysis or microarray data analysis in general. In this package, we provide two demo microarray dataset: GSE16873 (a breast cancer dataset from GEO) and BMP6 (originally published as an demo dataset for GAGE, also registered as GSE13604 in GEO). This package also includes commonly used gene set data based on KEGG pathways and GO terms for major research species, including human, mouse, rat and budding yeast. Mapping data between common gene IDs for budding yeast are also included.

Author: Weijun Luo

Maintainer: Weijun Luo <luo at cshl.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("gageData")

To cite this package in a publication, start R and enter:

    citation("gageData")

Documentation

PDF   Reference Manual

Details

biocViews ExperimentData, Cancer
Depends
Imports
Suggests gage, genefilter
System Requirements
License GPL (>=2.0)
URL
Depends On Me
Imports Me
Suggests Me gage
Version 1.1.1

Package Downloads

Package Source gageData_1.1.1.tar.gz
Windows Binary gageData_1.1.1.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary gageData_1.1.1.tgz
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Fred Hutchinson Cancer Research Center