yaqcaffy

Affymetrix expression data quality control and reproducibility analysis

Bioconductor version: 2.8

Quality control of Affymetrix GeneChip expression data and reproducibility analysis of human whole genome chips with the MAQC reference datasets.

Author: Laurent Gatto

Maintainer: Laurent Gatto <laurent.gatto at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("yaqcaffy")

To cite this package in a publication, start R and enter:

    citation("yaqcaffy")

Documentation

PDF R Script yaqcaffy: Affymetrix quality control and MAQC reproducibility
PDF   Reference Manual

Details

biocViews Microarray, OneChannel, QualityControl, ReportWriting
Depends simpleaffy(>= 2.19.3), methods
Imports
Suggests MAQCsubsetAFX, affydata, xtable, tcltk2, tcltk
System Requirements
License Artistic-2.0
URL http://sites.google.com/site/laurentgatto/r-bioconductor/yaqcaffy
Depends On Me
Imports Me
Suggests Me
Version 1.12.0
Since Bioconductor 2.2 (R-2.7)

Package Downloads

Package Source yaqcaffy_1.12.0.tar.gz
Windows Binary yaqcaffy_1.12.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary yaqcaffy_1.12.0.tgz
Package Downloads Report Download Stats

Workflows »

Common Bioconductor workflows include:

 

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center