spikeLI

Affymetrix Spike-in Langmuir Isotherm Data Analysis Tool

Bioconductor version: 2.8

SpikeLI is a package that performs the analysis of the Affymetrix spike-in data using the Langmuir Isotherm. The aim of this package is to show the advantages of a physical-chemistry based analysis of the Affymetrix microarray data compared to the traditional methods. The spike-in (or Latin square) data for the HGU95 and HGU133 chipsets have been downloaded from the Affymetrix web site. The model used in the spikeLI package is described in details in E. Carlon and T. Heim, Physica A 362, 433 (2006).

Author: Delphine Baillon, Paul Leclercq <paulleclercq at hotmail.com>, Sarah Ternisien, Thomas Heim, Enrico Carlon <enrico.carlon at fys.kuleuven.be>

Maintainer: Enrico Carlon <enrico.carlon at fys.kuleuven.be>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("spikeLI")

To cite this package in a publication, start R and enter:

    citation("spikeLI")

Documentation

PDF collapse_A14.pdf
PDF Ivsc.pdf
PDF IvsDG_TagE.pdf
PDF langmuir2.pdf
PDF R Script spikeLI
PDF   Reference Manual

Details

biocViews Microarray, QualityControl
Depends
Imports graphics, grDevices, stats, utils
Suggests
System Requirements
License GPL-2
URL
Depends On Me
Imports Me
Suggests Me
Version 2.12.0
Since Bioconductor 1.9 (R-2.4)

Package Downloads

Package Source spikeLI_2.12.0.tar.gz
Windows Binary spikeLI_2.12.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary spikeLI_2.12.0.tgz
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