sigPathway

Pathway Analysis

Bioconductor version: 2.8

Conducts pathway analysis by calculating the NT_k and NE_k statistics as described in Tian et al. (2005)

Author: Weil Lai (optimized R and C code), Lu Tian and Peter Park (algorithm development and initial R code)

Maintainer: Weil Lai <wlai at alum.mit.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("sigPathway")

To cite this package in a publication, start R and enter:

    citation("sigPathway")

Documentation

PDF R Script sigPathway
PDF   Reference Manual

Details

biocViews Bioinformatics, DifferentialExpression, MultipleComparisons
Depends R (>= 2.0.0)
Imports
Suggests hgu133a.db(>= 1.10.0), XML (>= 1.6-3), AnnotationDbi(>= 1.3.12)
System Requirements
License GPL-2
URL http://www.pnas.org/cgi/doi/10.1073/pnas.0506577102, http://www.chip.org/~ppark/Supplements/PNAS05.html
Depends On Me
Imports Me
Suggests Me
Version 1.20.0
Since Bioconductor 1.9 (R-2.4)

Package Downloads

Package Source sigPathway_1.20.0.tar.gz
Windows Binary sigPathway_1.20.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary sigPathway_1.20.0.tgz
Package Downloads Report Download Stats

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