qrqc

Quick Read Quality Control

Bioconductor version: 2.8

Quickly scans reads and gathers statistics on base and quality frequencies, read length, and frequent sequences. Produces graphical output of statistics for use in quality control pipelines, and an optional HTML quality report. S4 SequenceSummary objects allow specific tests and functionality to be written around the data collected.

Author: Vince Buffalo

Maintainer: Vince Buffalo <vsbuffalo at ucdavis.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("qrqc")

To cite this package in a publication, start R and enter:

    citation("qrqc")

Documentation

PDF R Script Using the qrqc package to gather information about sequence qualities
PDF   Reference Manual

Details

biocViews Sequencing, QualityControl, DataImport, Preprocessing, Visualization, HighThroughputSequencing
Depends Rsamtools(>= 1.3.28), methods, tools, utils
Imports reshape, brew, xtable, testthat
Suggests
System Requirements
License GPL (>=2)
URL http://bioinformatics.ucdavis.edu
Depends On Me
Imports Me
Suggests Me
Version 1.0.0
Since Bioconductor 2.8 (R-2.13)

Package Downloads

Package Source qrqc_1.0.0.tar.gz
Windows Binary qrqc_1.0.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary qrqc_1.0.0.tgz
Package Downloads Report Download Stats

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