ontoCAT

Ontology traversal and search

Bioconductor version: 2.8

The ontoCAT R package provides a simple interface to ontologies described in widely used standard formats, stored locally in the filesystem or accessible online. The full version of ontoCAT R package also supports searching for ontology terms across multiple ontologies and in major ontology repositories, as well as a number of advanced ontology navigation functions: www.ontocat.org/wiki/r

Author: Natalja Kurbatova, Tomasz Adamusiak, Pavel Kurnosov, Morris Swertz, Misha Kapushevsky

Maintainer: Natalja Kurbatova <natalja at ebi.ac.uk>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("ontoCAT")

To cite this package in a publication, start R and enter:

    citation("ontoCAT")

Documentation

PDF R Script ontoCAT package
PDF   Reference Manual

Details

biocViews Classification, DataRepresentation
Depends rJava, methods
Imports
Suggests
System Requirements
License Apache License 2.0
URL
Depends On Me
Imports Me
Suggests Me
Version 1.4.2
Since Bioconductor 2.7 (R-2.12)

Package Downloads

Package Source ontoCAT_1.4.2.tar.gz
Windows Binary ontoCAT_1.4.2.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary ontoCAT_1.4.2.tgz
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