nudge

Normal Uniform Differential Gene Expression detection

Bioconductor version: 2.8

Package for normalizing microarray data in single and multiple replicate experiments and fitting a normal-uniform mixture to detect differentially expressed genes in the cases where the two samples are being compared directly or indirectly (via a common reference sample)

Author: N. Dean <nemad at stat.washington.edu> and A. E. Raftery <raftery at stat.washington.edu>

Maintainer: N. Dean <nemad at stat.washington.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("nudge")

To cite this package in a publication, start R and enter:

    citation("nudge")

Documentation

PDF R Script nudge Overview
PDF nvignplot1.pdf
PDF nvignplot2.pdf
PDF nvignplot3.pdf
PDF nvignplot4.pdf
PDF   Reference Manual

Details

biocViews Microarray, TwoChannel, DifferentialExpression
Depends
Imports stats
Suggests
System Requirements
License GPL-2
URL
Depends On Me
Imports Me
Suggests Me
Version 1.18.0
Since Bioconductor 1.8 (R-2.3)

Package Downloads

Package Source nudge_1.18.0.tar.gz
Windows Binary nudge_1.18.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary nudge_1.18.0.tgz
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