miRNApath

miRNApath: Pathway Enrichment for miRNA Expression Data

Bioconductor version: 2.8

This package provides pathway enrichment techniques for miRNA expression data. Specifically, the set of methods handles the many-to-many relationship between miRNAs and the multiple genes they are predicted to target (and thus affect.) It also handles the gene-to-pathway relationships separately. Both steps are designed to preserve the additive effects of miRNAs on genes, many miRNAs affecting one gene, one miRNA affecting multiple genes, or many miRNAs affecting many genes.

Author: James M. Ward <jmw86069 at gmail.com> with contributions from Yunling Shi, Cindy Richards, John P. Cogswell

Maintainer: James M. Ward <jmw86069 at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("miRNApath")

To cite this package in a publication, start R and enter:

    citation("miRNApath")

Documentation

PDF R Script miRNApath: Pathway Enrichment for miRNA Expression Data
PDF   Reference Manual

Details

biocViews Annotation, Pathways, Bioinformatics, DifferentialExpression
Depends methods, R(>= 2.7.0)
Imports
Suggests
System Requirements
License LGPL-2.1
URL
Depends On Me
Imports Me
Suggests Me
Version 1.12.0
Since Bioconductor 2.3 (R-2.8)

Package Downloads

Package Source miRNApath_1.12.0.tar.gz
Windows Binary miRNApath_1.12.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary miRNApath_1.12.0.tgz
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