mgsa

Model-based gene set analysis

Bioconductor version: 2.8

Model-based Gene Set Analysis (MGSA) is a Bayesian modeling approach for gene set enrichment. The package mgsa implements MGSA and tools to use MGSA together with the Gene Ontology.

Author: Sebastian Bauer <Sebastian.Bauer at charite.de>, Julien Gagneur <julien.gagneur at embl.de>

Maintainer: Sebastian Bauer <Sebastian.Bauer at charite.de>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("mgsa")

To cite this package in a publication, start R and enter:

    citation("mgsa")

Documentation

PDF R Script Overview of the mgsa package.
PDF   Reference Manual

Details

biocViews Pathways, GO
Depends R (>= 2.9.0), methods, gplots
Imports gplots, graphics, stats, utils
Suggests DBI, RSQLite, GO.db
System Requirements
License Artistic-2.0
URL
Depends On Me
Imports Me
Suggests Me
Version 1.0.0
Since Bioconductor 2.8 (R-2.13)

Package Downloads

Package Source mgsa_1.0.0.tar.gz
Windows Binary mgsa_1.0.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary mgsa_1.0.0.tgz
Package Downloads Report Download Stats

Workflows »

Common Bioconductor workflows include:

 

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center