goseq

Gene Ontology analyser for RNA-seq and other length biased data

Bioconductor version: 2.8

Detects Gene Ontology and/or other user defined categories which are over/under represented in RNA-seq data

Author: Matthew Young

Maintainer: Matthew Young <myoung at wehi.edu.au>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("goseq")

To cite this package in a publication, start R and enter:

    citation("goseq")

Documentation

PDF R Script goseq User's Guide
PDF   Reference Manual

Details

biocViews HighThroughputSequencingData, GO, GeneExpression, Transcription, RNAseq
Depends R (>= 2.11.0), BiasedUrn, geneLenDataBase
Imports mgcv, graphics, stats, utils, AnnotationDbi
Suggests GO.db, edgeR, org.Hs.eg.db
System Requirements
License LGPL (>= 2)
URL
Depends On Me
Imports Me
Suggests Me
Version 1.4.0
Since Bioconductor 2.6 (R-2.11)

Package Downloads

Package Source goseq_1.4.0.tar.gz
Windows Binary goseq_1.4.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary goseq_1.4.0.tgz
Package Downloads Report Download Stats

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Fred Hutchinson Cancer Research Center